GgaEX1045887 @ galGal4
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21583440-21598829:+
Coord C1 exon
chr5:21583440-21583507
Coord A exon
chr5:21592187-21595565
Coord C2 exon
chr5:21598642-21598829
Length
3379 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTCTTCTGTTTAAGCTG
3' ss Score
8.55
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
ATAGTTGACAAGAACAACCGCTACAAATCCATCGATGGGACAGATGAAACCAAAGCAAACTGGATGAG
Seq A exon
CTGATGAAGATGAGGAGATGCCAGGAACTTCTCAGGAGCACCACTCCTCATCGCTGCAGAGGGCCAGTGTAGAAATCAGCCATCTCTCCAGGCCCTCCTTCCTCCACACCTCTTCCTCATCGGAGCACTCAGAAGCTATCAGCCAAAGGCAGGAACTGCACCGTCCTTCACCACACACCTCCTCATCCTGCAGATCTCCACATCCCCGGACAAGGAGCCCGCCTCTCTCCAGCTTTGATCGCCAGCTTCTTCATTCCCACCTGCAACAAACAGACCTGTTCAGGCAGTTCTGCCAGGAGCTGGTGGCTATTCACAGGGACATGGCAGAAAGCATGCATGTCATTGGTCAGAAGATGACCGACCTCACCAGTCAGGTTGGCCAAATGTGCCAGACCCTATCAGAAATTCGTGATGGGGTCCAGAGTTTTCATAGGACACAGAGCCCTAGTGTAACATGGGGGCCTCTTCTGCAAGCAGCTTGCTCAAAACCACCCCCTGAGCCCAGTGCAGAGTCTAACCAACTGCCTGCAAAACAGACCGCTCCTGCACGGACTACCAGATCACGAAAGAGAAAACACCATATTTAGTCTGTTTCATATAAAGTAAAGAAGGTTGCCCTGTCCAGAGCTGCTGCATGCTCACATGGCCTCTCCATATATATTAGAACTATGTGGGGAAGGTTAACAGCCAGCCCCAACCCATCTGTCCTCTGCTAATTTCTAACAAAGCACTGTGAATTACAGCAGCTGAATTGAATGGCTGTCCCTCTGCACTGACAAAGAGGATTCTCAGACCTTACAGAGCTTGGGATGTAGGGCATCTTCCTATTCATAGAAACTAGAAGATTTAACTATTTTCCCTCTGCTTTAAATGCTTTGTAAGCTAAGAGATGCAGTAGGAATCATTATCTTGATCTCTTTTTGTGCCTGCAAAACATTATTTACTGAGACAAGTGTCCTAGAGAACTCCCTTTGCTATCAACCCACAGACAGACCCTACTACTGCCTTCCCATCATCTTCCTGCAAATTACCATATGCACAGTGCAGAGTCTTAACTAATAGATGCATCCTTTAGAGCTCTAAAGATTTCTTGCTCGTTATTTTTATCTTGTGCTCAGCAATAATGGGCAATTCAGGGTTTACTATGACTGTTAGGCATAGGTTTGGGAAAAGGTATGTAGAAGCAGATCACATGCAGGGAAGGGAAGCAAGCACAATGCTGCGAGATCTTTCTGCTGTCAGAATGACAGGAGAAGAGATCTGAGCTCTGTGTGGCGTTAGACTGTTGAGAAGGGCTGATCTGGTATGTGCCTGCATGCTGTAGTACCACATGCATTTAAATAAAAGAGTTCAATCTTTTTCTCCTCCAGTCTATGTGAAACTTCCATCTGCCTTTCACAACTGAAGTTAAAATACAATTATTTTGTAGTGAGATGGCTCTTAAACGTAATTATATTATTTTCTTTCATGCTGTAGTCTTCAGTTTTGAACCACCTCTCCCTCCATAAAATCTAAGGGACTGCATAGGAATAAGGGAAGAGAGAGGGCTTCTGCCCTCAAGAACAGTTTGTTTGCGTCACTGTAACTCTGTTGACTTCAGTACAGTTGCTTTGGACTTGCTCAGTATTACTTGGGATAGAATGTGTGCTGTGGTCTCCTATTGTAAAAAGTTTACATCTAAATTCTGAGCTATATAGTTTAAGGTCTTGAACATGTTGGCTTTGTACTGCTTCCTACCCCCATACATATGGAAGAAAGAACTGTTGAAACATTTTAGTTGCTTTAGTGCTGCATGGTGTTTCAATGTACAATCCCAATTCTGAAAGTAGGCTTTAATAATGTTGCCTCAGGTGGAGATAATGTATTTGGCAGCTCTTTTTACAGCATGACTGTTCTCCACTTGATTTGCACATCTGCACCTACTGTGCTGCCCCATCTCTGAATATATCTGGGGCCGTCATACCCCAGCAGGGAAGAGGGTTGAGGTGGTACCTACATGCAATTAGCACAGCACTCTGGGCTGTCCCACTGTGGGTACAGATGGGTTGCAGAAAACTATTCAAGTCAATGTGAATGCCCATCGTCGTTCCACGTGTGAGCTATAGGCTTGACCAAAAAGCTGTATAAATTTCAACAGGAATTGAACATAGGTAGCACAGAGCAGCAGAAGGATGTCGTGTGTGTTCTTGGAGGATCTTCTTCATCAATCTGGCCTGTCCTTTGAAAGCATAGTGCACTAGCTTCTCTGGTGACTGTATGTCTCCTGTGTCAGACATTCCTGATGTGCTTTTCCTTTTTTTTTTTTTCTTTTTTGTTGTTCTGTAGTTCTAACTCAAGTAATTTATTTTTAATGGTGTGGTAAAAGACCCTTGGTTCAAGGAAGTAGAGCTCTAGTAAAGAGAGAGTTCTCCTTTCTTCTGAAGAATGGCCCACTTTAGTTTCATACAGAGGAAGCTCCTTGTAGTGCTGGTGCCAGAGCAGGGCACTTACCTTCCTGTGAGGACATCCTTTTACTTCTCTTGTACTGTTTGTATTCTGCAAACATGGTCTCTTGAAGGGAATGTTGGGGAAAATGCTAGAAGTGGATCTAATAATGTGAATCACAGAGAACTGAAAAATGGTGATATTGGTTTAAAGGCTTTCTGAGTCATTACAGTGCTGCTGCTATATATCAGAGATAATATTTTATATTTTTATAATATTTCGTCCCTTCTGATGTTCTCCCATGAATATACTTGATTCGATTAGCTCCTTTGATGTTGCCTGGGGGTGGAGAAGTTCCTTCCATGCAGGAACCCTCAGGTCAGCAGAGGAGGAGGCTCCCTGCAGTGCTGAGCACTTGGGGGAGTTAGGAGTGCTGTTGGCATCATCGCTGCCACCAATTTGCCTGCGCAAGTGGCTTTAGAGAGAGAAGCTGTTGTCTTGGCACAGGAACTGCAGTGGTCAGTACAGCCCCCTAGAGGGGGGATTATAGATTGTTCTCCTGCGGTTTCCTCTGTGGACTGTTACAATTTGGCCCAGATCTGGGGATTTCTTGCCTGCCCTGTGTAGACCCCTCAGTGGAATGGCTTTTCTGTACTGGCTCGCAAAGGATACTTACTCTTGCACACAGCATGTTAACTGGCTGTTGAAGTAAGTGCTCGTGTCAAAGCAAACTGCTATGCTCAACCCCACTATCCTTATGTCTTGTTTGTGCTAAAAAATTCTCAAAGTATTTTTGTTAAGATTCCAATAAATATATAACTCTTTTAACACAGCTGCTGTTGAGTTGTTTGTTTCTCTTAGCAAACTTTGGTCTGAACATGCATCAAGTCACTCCGGATCATACCCGTCACAGCCGATGGATCTCCTCAGGAGTGCTCAGCATCAGAGAGCCAAG
Seq C2 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053_MULTIEX1-5/5=C1-C2
Average complexity
ME(1-5[99=100];2-5[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=1.000 C2=0.115
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.4=100)
A:
NO
C2:
PF0085623=SET=PD(41.8=64.1)
Main Inclusion Isoform:
ENSGALT00000013067fB10915
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]