GgaEX1047824 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8871145-8871930:+
Coord C1 exon
chr17:8871145-8871237
Coord A exon
chr17:8871673-8871729
Coord C2 exon
chr17:8871820-8871930
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATATCTACTACATGATTAGCAG
3' ss Score
-0.22
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
ATTAGCCAGAAGAAGCTGAAGAAATATGAAAAGGAGTATCATACCATGAGAGAGCAGCAAGCTCAGCAGGAGGATCCAATAGAAAGATTCGAG
Seq A exon
CAGCTCTTGTCCTCGCTGAATTTCGTGCAGGTGGAATTGTCTTTCAGTGTTCGAGAT
Seq C2 exon
CGTGAGAACCGGCGTCTACAAGAAGCAAACATGAGGCTTGAGCAAGAAAATGATGACCTTGCACACGAACTGGTGACCAGCAAGATTGCTCTGCGGAAAGATTTAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'29-40,'29-39,30-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.297
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000001858fB11228
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGCAGGAGGATCCAAT
R:
TCTTTCCGCAGAGCAATCTTG
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]