GgaEX1048009 @ galGal4
Exon Skipping
Gene
ENSGALG00000008405 | RALBP1
Description
ralA-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026746]
Coordinates
chr2:98416678-98422777:-
Coord C1 exon
chr2:98422484-98422777
Coord A exon
chr2:98417405-98417499
Coord C2 exon
chr2:98416678-98417136
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTTACACTGTTGATTGCAGGAA
3' ss Score
7.45
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGTGATGGACAGGTAGCAGAAGATTTCACTTTGATATCAGGGAATCAGAATGACCGAGTGCTTCCTGCCTCCCACCAGCAGCCCCAGTGAACACCGTCGGGTAGAACACAGTGGGGGTCTTGCTCGTACTCCCAGCTCTGAAGAGATCAGCCCTACAAAATTCCCTGGGTTGTACCGTACCGGTGAGCCTTCGCCACCTCATGACAGCTTGCATGAGCCTCCAGATATAGTATCTGATGATGAAAAGGAGCATGGGAAGAAGAAAGGAAAATTTAAAAAGAAAGAAAAAAGAA
Seq A exon
GAACGTAGAGAAGTTGCGAGACGGTTCTTTTTATTTTGCATTTCCTTGACTATTAAATGGGAAACTAGCACATAAGATGGACATTGCAATTATGA
Seq C2 exon
CGGAAGGTTATGCTGCCTTCCAAGAGGACAGTTCCGGCGATGAAGCTGAAAGTCCTTCCAAGTTGAAGCGGTCCAAGGGAATACATGTCTTCAAGAAACCCAGCTTTTCCAAAAAAAAGGAAAAGGATTTTAAAATAAAAGAGAAACCCAAAGATGAAAAACACAAGGAAGATAAGCATAAGGAAGACAAACACAAAGAGAAGAAGTCAAAAGACTTAACTGCGGCAGATGTTGTAAAACAGTGGAAAGAGAAGAAGAAAAAGAAAAAGCCAATTCAAGAGCCAGAGATACCTCAAGTGGATGTTCCAAGTCACAGACCTGTGTTTGGCATTCCGTTGTCTGACGCAGTAGATAGGACCATGATGTATGATGGCATCCGCCTGCCTGCAGTTTTCCGTGAATGTATAGATTACGTAGAGAAGTATGGCATGAAGTGTGAAGGCATCTACAGAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008405_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(17.1=16.2)
Main Inclusion Isoform:
ENSGALT00000036901fB11248
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCTTGCATGAGCCTC
R:
ATTCCCTTGGACCGCTTCAAC
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]