GgaEX1049337 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34673046-34678046:+
Coord C1 exon
chr7:34673046-34673334
Coord A exon
chr7:34674504-34674670
Coord C2 exon
chr7:34674757-34678046
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTCCAAATGTACCTCCTTAGGTC
3' ss Score
7.83
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATCTGGGTGAAGCCATTGCCCTGAGCAGCAGCAGCCCACCCCCTGCAGATCTTCTGAGCCAGATGGATTTGCTCGCTGCTCAGCTCACCTCCGAAGATCTCCGCAGCTACCCCGGCAGCCGCCTGTTTGAGATGCAGGAGAAGCTGGCCAGCATGTCAGACTGCATCATGAAAACCCTGCGGTCCCGGTGGAGGTCACCGCCCCACGACAGCGCTGAGTAGTTGCTTAGAATTCCTGAGGAAGGAGGATTTGGTTACAAGTCTTCCCACAAAGCGTAGTTTTCTTACTG
Seq A exon
GTCTAATCATCTCTTGGATCCAGGGACCTGCACGTGCAAGGAGGTGCCCAATGCGCATCTCAGAAGGGCACCAGCATCTCTGTGTAATTACATTCTAGCTCTGCTGTTCTGAATCCCCTGTGAGAAATGTTTTCCTTGCAAGCTGGCTGTGTACACCACAGTATGCT
Seq C2 exon
AATTAAGCCATCTTTGGAGGCTGGCTGCTACCAGGTGCTACAGTGAGCCAAGCACATAACCAACTGTTTGGGTGTGAAATTGTTTGTCCAGCTCCTTCACCTTGCTGGGATTGCTGCATCCTGGATCTGCTCTGTTGGTTTTTTTTCACAGCTTTGTGAATGAAGCAGGATTGTTTTAAGATTGAAGAGTGGGAATCTGAGTGAAGTAAAACATCAAACATGCTGCGGAAACATGAGCTTTATTTAGTCACTAATTTACAGGTAACGACTTTTGACCCCAGAACACTTGCATGAAAAACACCTGCATAAGAGCTCAGCAAGCAGACAGAAGAGGCTTTTGCTTTGTGAGACTTTTTCCCCCCCCCTTTTTTTTTTTACCACCTCCCCTCCAGATAAACTTTGGTTTGAGATCCTAAGCTTACATGGAAAACAGAAAGGTTTGTTTAAATGCTTCAGAATAGCCCACAAAGATTCTCTCCGTATGGGAGAATGAATAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGAAAACCCTGCGGTCC
R:
GCAGATCCAGGATGCAGCAAT
Band lengths:
255-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]