GgaEX1050908 @ galGal4
Exon Skipping
Gene
ENSGALG00000012438 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr1:568158-592641:-
Coord C1 exon
chr1:592578-592641
Coord A exon
chr1:586716-587346
Coord C2 exon
chr1:568158-568243
Length
631 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTTTTTTCAGGAT
3' ss Score
13.91
5' ss Seq
TGGGTACGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAATCCATGCGTCGGGTGGGAGAGCCCTGAAACACTGCACTGGAGCGGTGTCAGCCACCACCAG
Seq A exon
GATGCAGCAGGGACTTTTTGGGGGAAGAAAACGGAGCGTCTCGGTTTGTTAGATGCATCTGTGCTGTGGGTAGCTGTAGGAAGTGGAGCAGAAAACAAGCCAGGCTGCCCGCCCCTCATCGCTGCGTCACCTTCCTGCTGATGGCCCAGATAAGCTGCTTGTGATGTGCAGGGGGTGCCCTGCCCCAGCATGGGCAGCTCTGAGCTCAGCACCCAGCACGGGGCATCCGGGAAAGACCTCAGATCGTGAGGTTATTCCAAGCTGGAAGGGATTCATAAGGATCATTGAGTCCAATCCCAGCCCACCCCCATTGTGCCCACTGACCGCATCCCCAAGTGCCACATCTCCACGGTCCTTAAGCACCTCTGTGGATGGGGACTCCCCCACTGCCCTGGGCAGCCTCTGCCAGTGCCTGACTGCTCTTTTAGAGAAGAAATTGTTCTTCGTATTCAATCTTTTAAGGGTGGGAGAAGGTTTCTGGCATTCTTAAGGTCCTGACCTAATGCTGCTTGGTTTGATTCTCATTTAGATACGTGCAGCCAAACGTCTCATGTTTGAAGAACGGAGATGAGTGTCTATTAGTTGAAACCATGTGAAATAAACTGCGTGCAGGACCTGGTCAGGGCTTTGG
Seq C2 exon
GGAGCGGGGATGGCCAGGGACAGATCCTGCAGCGCTTCCCCGAGAAGGACTGGGAGGACAACCCCTTTCCTCAAGGCATCGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0345613=uDENN=PU(36.5=79.3)
Main Inclusion Isoform:
ENSGALT00000020337fB11696
Main Skipping Isoform:
ENSGALT00000020337fB11695
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]