GgaEX1050912 @ galGal4
Exon Skipping
Gene
ENSGALG00000012438 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr1:543292-546039:-
Coord C1 exon
chr1:545864-546039
Coord A exon
chr1:545303-545380
Coord C2 exon
chr1:543292-543431
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTGTTTGTGACTCAGCTC
3' ss Score
6.03
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CTGCTGAAGATTGCCTTCGATGAGGAGGTGGCTTCAGACAGCGCCGAGGTCTTCAGGAAGCACCTGCACAAGCTGCGTTACCCCCAGCATGTGCACGGCACCTTCGCCTTCACCGTGGGCCAGTCTCCCAAGCAAGCCATGCAGCCCAAGGCCAAGGAGAAGAACCCCTCGCTCAG
Seq A exon
CTCCCAGCAGGTGACCGATATGTTCCAGGGTCTGACAGTGGGGGTCATGTCCCTCGGGCACCTTGGCCATTCGACCAC
Seq C2 exon
GACGCTCTCCAAAAACCTGGTGAAAAATGCCAAGAAAACCATTGGCCGACAATATGTGACACGCAAGAAATACACACCGCCTGCCTGGGAGCAGCGCAGCAGCCAGCACTTCCCGGAGGACAACGAGGATGAGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.111 C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAGGTGGCTTCAGACA
R:
CACCAGGTTTTTGGAGAGCGT
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]