GgaEX1051015 @ galGal4
Exon Skipping
Gene
ENSGALG00000014116 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr10:1879399-1881903:-
Coord C1 exon
chr10:1881713-1881903
Coord A exon
chr10:1880476-1880813
Coord C2 exon
chr10:1879399-1880179
Length
338 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTTTCTAAAGGCT
3' ss Score
8.88
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTGCACAAGTTCTACCGGGGGAGTGGTGGGAGCTTCAGCAAAGCACAGGAGGAGTGGACCACGGGAGCCTGGAAGAACCCGCACATGCAGCAGGCAGCGCAGAACGCGGCCATGGGGGCTGCACAGGGGGCCATGATGCAGCACGAGACGCAGTACTCAGCCACCCCCAACTACACCTACTCCAATGAGAT
Seq A exon
GCTTCTGTTCTGAAACTGTAAAACTGGCGGAGTATTTCTTGCAGGACCTATTCTTGGTCAAACCTTGCTGCCTTTTGCAATTAGCCCCACTGATTCTGGAAAGAGGAAGCCTGAGATGTGTCCCTGTTGGTTTTTGGGGCACGTGCTAACTTGCAGCTCCTTGTGGAAGCTCTGGGCTGGTGGGAGCAATTCCTTCTTGCTCCCGCTCCTATAAAGTGTGGAGAAACCTAGCTGCATAGCTCCATTGGGCTCCCATGCAAGGATGGCACCTCCTGGTCCACCAGCCCCAAAATCTGGCCCCGTTTGGGGAGGCTGGGCTTCCAGCAAGGCTCTTGCAG
Seq C2 exon
CCAAGCACACCAAGAATGGTTTCTTTGCTAAGGATATCACTTCAGCTGTTTGGCAGTAGGCAGTTGTCTCTTGACAAGACTAAAATGCAGCTAATGATGAAACGCCTGTCTGCGTGTATGTGTGTATATATATGTATAAACTGTAAGGAGAAAAGTAATCCTCTGCTGAGCCTATTATGTACTTAATCAGGTTTAAATATTGTGCAATTCATTTCCAGCTAGCCTAAAACTTACTCTGCCAAATCACGTGCTCTGTCATCCGTGTCTGCGAAATGATGAATGGAGTGACTTCACCTTCTATTAAGCCGCATAAACGATAACTGTAACGAGCTGTAACTAACAGGCATTGCTTCAGCACCTAACCCTGCTCTCTGCTGTGTCCTCTGTGCCAGCGTGACGCTCACCGCCCAAACATTGGTCCTGTAGAGCTGGGCAGGGCCCCACTCACACTGCCTTTACGTCCCATTAGCAGCCACCTTATGGGGTGGAGCCCCTCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014116_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PD(4.5=12.3)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCCAACTACACCTACT
R:
ACAGTTATCGTTTATGCGGCT
Band lengths:
355-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]