GgaEX1051185 @ galGal3
Exon Skipping
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5480202-5496931:+
Coord C1 exon
chr2:5480202-5480317
Coord A exon
chr2:5495172-5495315
Coord C2 exon
chr2:5496919-5496931
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAGAAAGTAAACCCATTTAGGAT
3' ss Score
0.01
5' ss Seq
CCAGTAGGG
5' ss Score
1.01
Exon sequences
Seq C1 exon
ACAACGATGACTTTATGACCAATCCTGACCTATCAATTTGTGTTCCTATTGCTGTGGGAGAGTCTGATATCGAGGAGGAAGATGAGGAGCAAAGCACGTTTACAGAAATGGAGCAG
Seq A exon
GATTATTTCCAGCAGGAAAAGCAGCTGCAGCTGAGGGGGCAGCGATGCCAAAGCCCAGGCGCCCGAAGTCAGAACTCTGAGATTTGTGAAGAGTTAAGTGAGTTGCACGTGGATAAGCAGTTGAAGGCTGAGCCACCACCTCCA
Seq C2 exon
AACACTGCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'20-26,'20-25,27-26=AN
Average complexity
A_C3
Mappability confidence:
79%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.777 A=0.771 C2=1.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(14.1=100)
A:
PF065128=Na_trans_assoc=FE(17.6=100)
C2:
PF065128=Na_trans_assoc=FE(1.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]