GgaEX1051262 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8927057-8928961:+
Coord C1 exon
chr5:8927057-8927554
Coord A exon
chr5:8928145-8928319
Coord C2 exon
chr5:8928839-8928961
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTCTCCATCCCCAGGAC
3' ss Score
11.17
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TAGAATGGCAGCGCTCGGCGCCCGGCCGGGCGGTACGGGCTGGGGGCGGCCCGGCTCCGCGCACCCCGGCCGGGACGCGGCGGCTTCGAGAGCGGCTCCGGCTCCCGCAGGAGAGCGTGCTGCCCGGACACCTGCGCGCCGGGCGGCCGCAGGTGCTGGGAGGGCTTCACGTGGGCGGGGGCCTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGCGCGAGGCGGTCCCGCGGCACCTCCCTCCGCCACCTCCTCCCGCCCGGCAGCGGCAGCGGCAGCCGCGGCGCCGCAGCCTCCGCCGCCGCAGCGCCACCGATGGGGTCCGGCGGCCGCCCGAGCGCGGCGGGGGCGCGGGCGCTGCCGCTGCTGCTCCTGCTGCTGCCCGCGCCGGGCCCCGCCGCCCCGCCGCCGCCCG
Seq A exon
GACTTGCTCCTGTCCTCGTTTCTCTCTCCCCCCATTTCCTCTGCCCCGAAGCTCCCACGCGGATGTTGGCGTGCCGTGCTCTGATGGCTGCCGGGCGACGGCGGTGCTGCTCACAGACACCGCTTTTGTATTTAAAAAGATTGGCGCTGATAATAGCTTATGCGTCAGTTCAATG
Seq C2 exon
ACGTGGATGAGTGCGCCCTGGGGCTCGATGACTGCCACCCGGATGCCATTTGCCAGAACACCCCCAAGCTGTACAAGTGCATGTGCAAGGTCGGCTTCACCGGCGAAGGGAAGAAATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129472=EGF_3=WD(100=85.7)
Main Inclusion Isoform:
ENSGALT00000009480fB11745
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCCGCCACCTCCTC
R:
CTTGGGGGTGTTCTGGCAAAT
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]