GgaEX1052326 @ galGal4
Exon Skipping
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32745534-32764242:-
Coord C1 exon
chr4:32764042-32764242
Coord A exon
chr4:32756264-32756395
Coord C2 exon
chr4:32745534-32745573
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTCTTGCTTACAGAAC
3' ss Score
10.34
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGTGCATTTCTTTCCCCTATACTATCTTTAAATTATTTTTTTTACACCTCCTATGTTTCTCTTCCTATCAGGCCGTCTCAGGATGGAGCAGGACACCTGCCCTGGCTGCACCCTGCAACTTGCAGGATGCACGAGCCCTGCTGCAATGACACCTGCACCTCCACACGCTGCCGGAGCTCCCAGCTTGCCAGGTCCCTCGCA
Seq A exon
AACAACAAGGAAAAAAAACTATTTTTGCTTCTTGTGGCTGTATGTGGCTGTGTTTGGGACCAGCCTGAAGGGCTGGATGACAGTAAAGCTTGAAATTATTTGCCCCATTGTCCAAACTGAAAGAAATACAAG
Seq C2 exon
ATCGCTCTGAAAGAAATAAACCAGACTGCCGCTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCATTTCTTTCCCCTATACT
R:
GAAGAGCGGCAGTCTGGTTTA
Band lengths:
238-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]