GgaEX1053029 @ galGal4
Exon Skipping
Gene
ENSGALG00000009728 | SLC25A13
Description
calcium-binding mitochondrial carrier protein Aralar2 [Source:RefSeq peptide;Acc:NP_001012967]
Coordinates
chr2:24307040-24313182:-
Coord C1 exon
chr2:24313023-24313182
Coord A exon
chr2:24311299-24311377
Coord C2 exon
chr2:24307040-24307140
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCCAACATTTGGAATGCAGGAC
3' ss Score
3.38
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GAGGACAGAAGAAGCAGACACACTTGGATCCAGAATCTTAACTGCTGAGAGTTACGGTACTCTTGAAAAGAGCCTCTTTTTTGGATATTTGCAGTATTTAGCAGAGGCTATAGATGTGCACATCTCGGTCAAAAATCACAGCCCAGCTGAATTGGAAAAT
Seq A exon
GACCTGATTTGATAAGCTGATAAAAGAAAACAAAACTGAGAACATGTTGGAAGTACTCGAAGTGAAAATTACAGTTTAG
Seq C2 exon
GGTTCAGTGGATGATTTCTTCTTAAAGATGAAACAGTTGACTTTGTTGAGATGTGAAGAGGTCTGCAGTGTCATCTATGCTCACTCCATGATTCCTAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-'16-12,'16-11,17-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000015533fB12016
Main Skipping Isoform:
ENSGALT00000015533fB12017
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCAGTATTTAGCAGAGGC
R:
GGCTAGGAATCATGGAGTGAGC
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]