GgaEX1053408 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19501055-19504323:+
Coord C1 exon
chr7:19501055-19501479
Coord A exon
chr7:19502929-19503141
Coord C2 exon
chr7:19504206-19504323
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCTGGTGATGAAGGTT
3' ss Score
4.8
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
CTGTATATTTGCAAAGTATCCCCCCTCAGTGAGAGGTCCCAGCTGAAGATAACTGAGGTAACTAAGGATTCCAAATATTGGCACGGTAATTTTACCTCTTTCCAAGTAGCTCAACATAAACGAGGAGAAAAAAAAAACAAGAGTAGCGTCTCTGCACATGGGCACGTCCCCGGCGCAGGCAGGCGCTGTGGAGCGGGACCAGCCGGCTGTGTGGAAAGGCGGGAAGCGGCCGGCTGCCGTGCCTCCGCCCGCCAGAGGGGAGCCCGCGCTGCCCATCTGGGGGCTGCTCCGGGAGGAGCGCGAGAGTCGCCCCGCGCTTCTGTGCTTCCTCCTCTGGGGTCCGCGGGCGCGAGGAGGCGCGAGGAGAGCGGCACGCGGCCATGGAGCGCGGCAGGACCGAGCAGCCACCGGCCGGGGCCCCGCAG
Seq A exon
GTTTGTTGGAGAAGCCATCAGGAATGTTTAATGGCAGATTCACCAAAGAAGAAGCATTCCTGTCTTTTCATGCAATGCATAACTAAGATGTGGAACTTTTTGCCACAGGATATTGTAGAGGCTAAAAAACATGCAGAGCTTCTTTAAAGGGTACAGTTAAGTAGTAATCCGTTAAGGAAATAACACAACAAGAACAAGCCAAGACATACCAAG
Seq C2 exon
ATAGAAACAGATGACCATACAGCCCTGGTTAGTAAGCCCAGGAATAAAGGAGGAAATGGTGATCTGGCATCAGCTGGATTTAACATTATCAACTCCATTATAGGATCAGGTATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0149013=Aa_trans=PU(44.0=55.0)
Main Inclusion Isoform:
ENSGALT00000018002fB12074
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGGAAAGGCGGGAAG
R:
CAGCTGATGCCAGATCACCAT
Band lengths:
295-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]