GgaEX1054739 @ galGal4
Exon Skipping
Gene
ENSGALG00000015599 | SOHO-1
Description
sensory organ homeobox protein SOHo [Source:RefSeq peptide;Acc:NP_990717]
Coordinates
chr4:80966340-80969431:-
Coord C1 exon
chr4:80968383-80969431
Coord A exon
chr4:80968041-80968236
Coord C2 exon
chr4:80966340-80967928
Length
196 bp
Sequences
Splice sites
3' ss Seq
GCAGGCTTCATTCCCCACAGCAG
3' ss Score
5.3
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
TCCGCCCTGCCTAAGGAACCTTATTCTCAGCCAATAATAATAATCCCAAATCCTTCTCTCCCCGCTTCCTTCCTGCTCCCTCCTTTCAGCGATTCCTCACGGCCTTTCCTTTCTCTCTCCTCCTGCACCTCTCCCCAAGCCCTCAGCCCTTTGGCTCCGTCTAGCTCCATCCCCTCCCTCCTCCTCCCCGACCCCTCCTCCTTCTCCCCCCCCGTCCCCAGCCCTCCCTCCGCCCCGGCTGCCGCCTTCCCTCCGCCGCCACTCCTGCGGTTAGGCTCAGCGCGCCATGGTGCAGCTCGGGGGAGGCCGCGGAGCCCCACCGCCTCTCCTGGCCCCACCGTCGGCCTTCAGCATCGACAGCATCCTGCAGCCCGGTCCCCGCTGCCAGGCCCGGGAGCAGGGGAGGGCCCGCTGCGCGCTGCCGGAGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGGGGCCTGCGGAGGAACACCCCACTAAAGGCTCCACCGACTCGG
Seq A exon
CAGTTCGAGGAAGCGAGGCTCCGTGGGAGGACATGAACCCCTCTCGAAACCACCTGCTTCTAGAGGCCACTCCCGGCCTCTTTGGTCGTTTTTCCCGTGTCCTGGAGCCCCTTCCCACTCCAATTCACGGCGGCAGAGAGATATCCTTTAGATGTATACTGCGAGCTCGTCTCCCTCCTCCCCACGGAGGCTGGAG
Seq C2 exon
GCAGCGAGAGGCTGCTGGCGGAAGGGCCGCGCCGCGCGGATGCCGAGGCCGAAGGCGCGGTTTCACCGCTCTCCACGGAGAGGTTCCGCGGATGCCGACAGCCGTCGCTGCGGGATACCGGGGGCTGCGGTAGAGAGAGCGGCAGGTGTTCAGCGGCGGGAGGCAAGAAGAAGACGCGGACCATCTTCTCCAAGAGCCAGGTCTTCCAGCTGGAGTCCACCTTCGACGTGAAGCGCTACCTGAGCAGCGCCGAGCGGGCCGGTCTGGCCGCTGCGCTGCACCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAACCGCCGCAACAAGCTCAAGAGACAGCTGTCGGCTGAACCCGAGGGTCCGAGCCAAGCGGAACCCCCAGGGGAGCCCCCTCCGCCTCCCGCCGCCTCTTTCTCCTTCCCGGCCCTATACAAGGACAGCGCCCTGCTCAGCCGCTGCCTGCTGCCACTCCCCTTCCCTCTGTTCTACCCGGGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015599_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.606 C2=0.491
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=30.2)
Main Inclusion Isoform:
ENSGALT00000025152fB12291
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACACCCCACTAAAGGCT
R:
CTGGAAGACCTGGCTCTTGGA
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]