GgaEX1054848 @ galGal4
Exon Skipping
Gene
ENSGALG00000000233 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:HGNC:11207]
Coordinates
chr27:3874435-3876957:-
Coord C1 exon
chr27:3876657-3876957
Coord A exon
chr27:3874984-3875071
Coord C2 exon
chr27:3874435-3874609
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCCCGTCTTCTTCTTTCCAGCCC
3' ss Score
10.03
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTACTTCAAAACACCATCGGGTGAACTGCAAACAGTGCTGCTCCAGGAAGCCCCGGCCGTGACGGTGGCTCCATCCAGCACCTCTTGCAGCAGCCCCGTGTCCCGCAACTCTGGCACGGTGACCAGCAGCAAGAAACCAACCGCACGCAAGGAGCGCCCGCTGCCAAAGATCGCGCCCGCCGGAGGAGTCATCAGCTTGAGTGCAGCCCAGCTGGCAGCTGCAGCACAGGCCATGCAGACCATCAACATCAACGGAGTGCAGGTCCAGGGTGTGCCTGTCACCATCACCAACGCTGGAG
Seq A exon
CCCCCATCACGGCTGCCCGGGTGCTGTGCAAGGCCCAGGCTGCCACCTCCGTGAGTGCCCGAGCGTGGAGCGGCCCTTAGGGTCCGGG
Seq C2 exon
GCCAGCAGCAGCTGACTGTGCAGAACGTCTCTGGCAACAATCTGACCATCAGCGGCCTGAGCCCGACTCAGATCCAGCTGCAGATGGAGCAAGCGCTGTCCGGGGAGATGCAGCCAGGGGAAAAGCGACGACGGATGGCGTGCACCTGCCCCAACTGCAAGGATGGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000233_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.192 C2=0.610
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000000312fB12316
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCAACGGAGTGCAGGTC
R:
CTTTTCCCCTGGCTGCATCTC
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]