GgaEX1055709 @ galGal4
Exon Skipping
Gene
ENSGALG00000016803 | ST6GAL2
Description
beta-galactoside alpha-2,6-sialyltransferase 2 [Source:RefSeq peptide;Acc:NP_001161219]
Coordinates
chr1:135050977-135053400:-
Coord C1 exon
chr1:135053335-135053400
Coord A exon
chr1:135052996-135053144
Coord C2 exon
chr1:135050977-135051077
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTATTTTGAATACAGCTT
3' ss Score
4.59
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCTTGCAAACTTTCTGAGCTTTAACCCTTTGCAATGAAACTTTCCAGGCGAGGTGTCTGCATCCAG
Seq A exon
CTTAGAGGCATTTCTCCTTCGTGAGTGCTTTCAGATTTAAGTGATATTTGTGGTGGTTACCCATTGGTTTTGTGTGCGTCTTGCTAAGACCAGAAGTTGTGCTGTTGATAGAAGATGTGTGGTGAGAAGCCTATTCAGACACTCGGGAG
Seq C2 exon
CAGGTGTAAAAATAGCAGCAGAGGATGAAATCAGCCCTACGAAGAATTTGTACAAACTCTTCACTACACAGCAAAACCCTATTTGTGTATTTAATTGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016803-'5-1,'5-0,6-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000027126fB12457
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCAAACTTTCTGAGCTTT
R:
ACACAAATAGGGTTTTGCTGTGT
Band lengths:
154-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]