GgaEX1056553 @ galGal4
Exon Skipping
Gene
ENSGALG00000005824 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr15:7842238-7843935:-
Coord C1 exon
chr15:7843734-7843935
Coord A exon
chr15:7842746-7842851
Coord C2 exon
chr15:7842238-7842389
Length
106 bp
Sequences
Splice sites
3' ss Seq
GAACTGTTGCTTTATCATAGCCA
3' ss Score
4.88
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGCTCAAGACTCCTGCTCAAGCCAGTGTGGGAAGCTGCTTGGTGCCTGTTCATGCCAGGAGATCTGCCAGTCCTTGGGGACCTGCTGTCCTGATTACAATGAATTTTGTCTCCACATTTCTCCATACTCAGGATCTCTGATGGGAGGCAAAGATTTTTTGATAGAGAATACAGCATTTAATACTTCTGTGTTAATGTGCAG
Seq A exon
CCAACAGAGATTTCAGTTTAGATGAGCACAGAAACTACTCCTTGGCAGACCCCAAACTTACAGCACTACTTGGAACAGCTCTGCAGTCCCTATACATCAGTCACAG
Seq C2 exon
ATTCAAGCAGCAAGTCATAACCAGTGGCTATGTTGATAAGGATGGAAAAGCCCACTGCCTCTCCCCATTGCTGTATGAAACTGGTTTCATCCCCTTTGAAGTTTCTACAGATGGCGGGCTGACATTTCCCTACTCTGGAACTTGGTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103312=Somatomedin_B=WD(100=60.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009356fB12584
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACTCCTGCTCAAGCCAG
R:
GCAGTGGGCTTTTCCATCCTT
Band lengths:
255-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]