GgaEX1056554 @ galGal4
Exon Skipping
Gene
ENSGALG00000005824 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr15:7838874-7840065:-
Coord C1 exon
chr15:7839864-7840065
Coord A exon
chr15:7839261-7839355
Coord C2 exon
chr15:7838874-7838959
Length
95 bp
Sequences
Splice sites
3' ss Seq
CGTGTCATTTACACTTTCAGACA
3' ss Score
8.32
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
CAACACTCCATCCATCTGGAGCCCAGCACATGCGTTGGCTTGGCACCTTAGCGAAGACTTCAGAAATAAACCAGCTGCATGGGCAACTGCAAAATGTATAGAATGGGACAGGGAGGAAGAGAAGCTTCCAAACTTCATGGAAGAAATTATAGATTGCCCTTGCACCTTGGCACAGGCAAGAGCTGACACTGGCAGGTTCCAT
Seq A exon
ACAGCACTGACCTGAAGACCAGATGGTGTCACCTCCTCACCTACGTCCAATATAAATGATGGCAGTGTGAAACCTATTGCCTAAGAATAAAGATG
Seq C2 exon
ACAGATTACGGCTGTGACATTGAAAAGGGAAGTGTGTGTACTTACCACCCTGGCGCTGTGCACTGTGTAAGGGCCATTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
PF0378212=AMOP=PD(4.5=40.0)
C2:
PF0378212=AMOP=FE(19.2=100)
Main Inclusion Isoform:
ENSGALT00000009356fB12585
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGGGAGGAAGAGAAGCT
R:
GGCTTGAATGGCCCTTACACA
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]