GgaEX1057306 @ galGal4
Exon Skipping
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19638462-19640846:+
Coord C1 exon
chr6:19638462-19638533
Coord A exon
chr6:19640298-19640426
Coord C2 exon
chr6:19640737-19640846
Length
129 bp
Sequences
Splice sites
3' ss Seq
GATGCTCTTCCCACTTGAAGGTA
3' ss Score
8.42
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
GGTGGTCCCTATCATGATCTCCTGCATAGTGTTTTAGGAGCATATACATGTTATAGACCGGATGTGGGATAT
Seq A exon
GTACAAGGGATGTCCTTCATTGCTGCTGTGCTCATTCTCAATCTGGAAGAGGCAGATGCTTTCATTGCCTTTGCTAACCTTCTAAACAAGCCATGCCAGCTGGCCTTTTTCCGTGTGGATCACAGCATG
Seq C2 exon
ATGCTGAAATACTTTGCAGCCTTTGAAGTATTCTTTGAAGAAAATCTTCCCAAATTGTTTCTTCATTTCAAATCATACAGTCTCACTCCAGACATATATTTGATAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
PF0056613=RabGAP-TBC=FE(18.4=100)
C2:
PF0056613=RabGAP-TBC=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCTATCATGATCTCCTGC
R:
CAAATATATGTCTGGAGTGAGACTGT
Band lengths:
171-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]