GgaEX1057315 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82881628-82884677:+
Coord C1 exon
chr4:82881628-82881722
Coord A exon
chr4:82882790-82882861
Coord C2 exon
chr4:82884549-82884677
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTGTTGAATTATAGGGC
3' ss Score
7.67
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
ATGCTGGATTTTCTACAGCTGACAGAGAAGCAAGTTTGGAGTTAATAAAACTGGATATCTCAAGAACGTTTCCTAATCTCTGTATATTCCAACAA
Seq A exon
GGCGGTCCTTACCATGACACATTGCACAGTATTTTAGGAGCCTATACTTGTTACAGACCTGATGTAGGATAT
Seq C2 exon
GTACAAGGCATGTCTTTCATTGCAGCAGTACTGATTTTGAACTTGGATACTGCAGATGCCTTCATTGCATTTTCTAACCTTTTAAATAAGCCCTGTCAAATGGCGTTTTTCCGTGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(13.6=100)
A:
PF0056613=RabGAP-TBC=FE(10.1=100)
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAGAAGCAAGTTTGGAGT
R:
AACGCCATTTGACAGGGCTTA
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]