GgaEX1058434 @ galGal4
Exon Skipping
Gene
ENSGALG00000004087 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr10:6080523-6082566:+
Coord C1 exon
chr10:6080523-6080596
Coord A exon
chr10:6081421-6081620
Coord C2 exon
chr10:6082387-6082566
Length
200 bp
Sequences
Splice sites
3' ss Seq
GAGTTAAATTTGCTTTTCAGACC
3' ss Score
6.74
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATTCCAGTTGGTAAGGAGTTGGAAATTAAACTGGTACAGCTGAGATGGACATTTACATGCAAATGCTTCCAAGT
Seq A exon
ACCTGGAACCAACACTGCAACACATAGACATTTGCAAACATGACAAGCACACTCTGGCAGATCAAGGCATTTTCTTTAAGCCACAAAATGTGGGGATGTGTAAAGCTCCAGAGCAGTGCTCTAACTTTGGAACCTCAAAGAAAGGTTCAGTGCATGCAGCCCTGCTTCAGCCAGAAGCAGTAACACTGTTTATGAAGAAA
Seq C2 exon
TGCTCTACTGAATGTGGTGGTGGAACTCAACAGAGGGAAGTCATTTGTGTCAGGAAAACTGAAGGCAACTTTGATGTTTTGAACCCCTATGAATGCTCATATGTGGAAAGACCTCCCAGCCAGCAATCCTGCTACCTCAAACCCTGTGGATCTAAATGGTTTCATACAGAATGGAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004087-'30-33,'30-32,31-33
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=PD(85.7=80.0),PF0009014=TSP_1=PU(15.1=13.3)
Main Inclusion Isoform:
ENSGALT00000006501fB12856
Main Skipping Isoform:
ENSGALT00000006501fB12855
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTTGGTAAGGAGTTGGA
R:
TGTGCTCCATTCTGTATGAAACCA
Band lengths:
252-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]