GgaEX1059425 @ galGal4
Exon Skipping
Gene
ENSGALG00000016144 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:HGNC:11876]
Coordinates
chr1:108305109-108305932:-
Coord C1 exon
chr1:108305822-108305932
Coord A exon
chr1:108305354-108305423
Coord C2 exon
chr1:108305109-108305152
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTGCTCCTCAATAGGCT
3' ss Score
8.84
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
AGATACGTATTACTATAGTCAAGGAGTAGCAGCTGAAGTCTCCTTTAAAAGCTTTATGAAGCTAAACACCAGTGCGGGGAATACAGACTTGTACAAAAGGCTGCAAAGCAG
Seq A exon
GCTTACAAGCCTTTTGTGCTGCCTGGCTGTACTGTGGTCTGCGGTCTTCCACGTGACAGTTTTGGTAAAT
Seq C2 exon
TGATTACTGTGCATCAGGAAATGTGGTTTCTCTGCGCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.1=100)
A:
PF154941=SRCR_2=PD(9.4=33.3)
C2:
PF154941=SRCR_2=FE(15.5=100)
Main Inclusion Isoform:
ENSGALT00000026003fB13044
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATAGTCAAGGAGTAGCAGCTGA
R:
TATGCAGCGCAGAGAAACCAC
Band lengths:
143-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]