GgaEX1059444 @ galGal4
Exon Skipping
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:624835-626496:+
Coord C1 exon
chr28:624835-624951
Coord A exon
chr28:625202-625373
Coord C2 exon
chr28:626360-626496
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTCCTCTGTCCCAGACT
3' ss Score
8.57
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
TGGTGCCTTGTACCAGCCTCACCTTCAGGTGCTCCAGCAACATCTGTATTGGAAAAGAAAATCCCGAATGCGACGGAGTTGTTGACTGCAGCAATGGCTTTGATGAGAGCAATTGTG
Seq A exon
ACTGCGGCTTAACCACTGCTCTGGCCTTCAGCAAGATCGTGGGTGGGAGCTCTGCAGCTCGAGGAGAATGGCCCTGGCAAGTCAGTCTCTGGCTTCGGCAGAAGGAGCACAAGTGTGGGGCTGTCCTCATTGCCGACAGGTGGCTGCTTTCTGCAGCTCACTGCTTTGATAT
Seq C2 exon
GCCTCATGACAAAGCACCTGCAAAAAGCAGCAGTGAATGTGATTGGAGACCAGGACTGCAAAAAGTTCTATCCTGTCCAGATCAGCAGCAGGATGGTGTGTGCTGGTTTCCCGCAGGGTACCGTCGACAGTTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458_MULTIEX1-10/11=9-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(19.8=68.2)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCAGCCTCACCTTCAGG
R:
GAGCAACTGTCGACGGTACC
Band lengths:
245-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]