GgaEX1059628 @ galGal4
Exon Skipping
Gene
ENSGALG00000004538 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr8:7062659-7064878:-
Coord C1 exon
chr8:7064615-7064878
Coord A exon
chr8:7063524-7063787
Coord C2 exon
chr8:7062659-7062922
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATGAAGAGTTTTACTTACAGGGA
3' ss Score
2.76
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAATTGATAGCCCAACCAATGTGGTGACAGGTCGAGTGACAGAGGACACAGCCACTGTCTCATGGAATAAAGTTCAGGCTCCCATAGACAGGTACATGGTGAGATACACCTCAGCTGATGGAGACACCAAGGAAACAGAGGTAGGCAGTGAAAACAGCATCATCACCTTATTGAATCTGAAGCCAGGCATGGAATACACCATCCACATCTGGGCAGAGAAGGGACCCCATAGGAGCAAGAAAGCCAGCACCAGAGCTCTGACAG
Seq A exon
GGATTGACAGCCCAACTAAGCTGTTGACTGACCATGTGACAGAGAATACAATCACTGTTGCCTGGAACAAAGTCCAGGCGTTAATAGATAGATACAGAGTGAATTACACCTCGGCTGATGGGGATACAGAGGAGAGAGAAGTGGAGAAAGACAAGAATGTTACCACCTTGGCAGGACTGGAGCCAGGCATGGAGTATGTTATTCACATCTGGGCAGAAAAGGGAGAACAACAGAGCAAGAGGGCCAGCACTGAGGCTGTGACAG
Seq C2 exon
AAATTGACAGCCCCACTCACCTGGTGACTGATCAAGTGACAGAGGACACAGTCACCATCTCCTGGGACAGGGTTCTGGCTCTCATAGATAGGTACATGGTGAATTACACCTCTGCCAATGGTGATACTGAGGAGATAGAAGTGGCGAAGAACAAGACTGCCACAACTCTGGTAGGACTGAAACCTGGCACTGAATATGTCATCTACCTCTGGGCAGAGAAAGGAGTGCGGCAGAGCAAGAGGACCAGCACTGAAGCAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004538_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=0.360 C2=0.287
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=WD(100=89.9)
C2:
PF0004116=fn3=WD(100=89.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGTGGTGACAGGTCGAG
R:
TGGTGACTGTGTCCTCTGTCA
Band lengths:
306-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]