GgaEX1061145 @ galGal4
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8632423-8646199:-
Coord C1 exon
chr17:8646081-8646199
Coord A exon
chr17:8634764-8634851
Coord C2 exon
chr17:8632423-8632680
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCAATGAATTTTCAGGTG
3' ss Score
8.94
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTCTCTCCTGGGGTGTTTGAAAATGTCCCAAGTCCTGTTGATGAAGAAGTGAAAGTAGCTGTTATCAGAGATACTCTTCGTCTAGTGGACCCTCAGAAAAAGAAGAGAAAAGATATCCA
Seq A exon
GTGCATCTTTGATCTCCCAGTCAGAAGTTTCAGTGACTTGCTTGAGGGCCCAAACTGAGGTGCATGTGAAGGAAGTCCAGATGTGCAG
Seq C2 exon
ATCTCAGACTTCAGAGCATGTGTCAGAAACAAAAGAGGATCTGCTGGATGCAGGGCCAGCGGGTGGACTGGAATATGATACCAGCAAGACCCCAGAGGCTGGCCTACCCTCCCTTTGTCTCAAGCAAGTGTTTCCAAAGTATGCTAAGCAGTTTAATTATCTGCGACTTGTGGACAGAGTGGCTGCATTGTTCATCCGATTTCTTGGTGTCAAAGGGACAACAAAATTGGGGCCGACGGGTTTCCGGACGTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-5/6=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0313310=TTL=PD(10.9=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGTCTAGTGGACCCTCA
R:
TGAGACAAAGGGAGGGTAGGC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]