GgaEX1061517 @ galGal4
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:51033945-51036907:-
Coord C1 exon
chr4:51036813-51036907
Coord A exon
chr4:51035220-51035474
Coord C2 exon
chr4:51033945-51034080
Length
255 bp
Sequences
Splice sites
3' ss Seq
TACTAGACATCTCATTTCAGAAT
3' ss Score
3.76
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGAAATATGGAATTGAACCAACTATGGTTGTACAGGGAGTCAAAATGCTGTATGTTCCTGTGATGCCAGGTCACATTAAAAGATTAAAGCTGAC
Seq A exon
AATTTCAGCTTTCACTGGTAGCATAGTGTATGGAAACTGTTGAATCAGGGCCTGAAGCTCTGATTGACCACCTGGGGTAAGCACTGAGTCAGCCATGGGAGCACAGGTGAAGGCAATTCACCTGTGTGGCCAGAAGGGGTGGAGCCAGGCTGCACCTCTCCTAGACCTCATTTAAGGGCTGACTGCCATGGGGGAAAGGATCTCTTTCTGGAGATTGTGCCTCTTGGAGTATTTTTCAGCGATCCCGGGACACGG
Seq C2 exon
GATGCAAAAGCTTGTGAAGCCATCAGCTGACAAAAAGTATGTGGACTTGACAGTATCATTTGCTCCAGAGACTGATGGAGATGAAGACTTGCCAGGGCCACCTGTGAGATACTACTTTGTTCAGGAAGACAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762-'50-56,'50-55,51-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.2=100)
A:
PF093585=UBA_e1_C=PD(8.3=53.3)
C2:
PF093585=UBA_e1_C=PD(28.5=76.1)
Main Inclusion Isoform:
ENSGALT00000019202fB13375
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTATGGTTGTACAGGGAGTCA
R:
TCAATTGTCTTCCTGAACAAAGTAGT
Band lengths:
212-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]