GgaEX1062580 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17887838-17890732:+
Coord C1 exon
chr8:17887838-17887900
Coord A exon
chr8:17888401-17888472
Coord C2 exon
chr8:17890583-17890732
Length
72 bp
Sequences
Splice sites
3' ss Seq
TATTATGGTCCCTGTTATAGTGG
3' ss Score
6.26
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AACAGATGTACATATGTTGGCTGTGGTGAAACCCATGTTGATCACAGTACCACCCATTCCCAG
Seq A exon
TGGCTTCAGATAAAAACCCTATAAATCAAGCTGAACATGTCCTCTCCTGCTAGATTTTGATTTTAGATCCAG
Seq C2 exon
GAGACAAAACACTGTCTAACTGTCAACCTTACTACGCTCCGTGTTTGGTGTTATGCCTGTAGTAAGGAAGTATTCCTGGATAGAAAATTAGGATCTCATTCTCCATTGCCCGATGCAAGACTGACTCAAACACAAGAAAATAGCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=FE(30.3=100)
A:
PF0214814=zf-UBP=PD(7.3=37.5)
C2:
PF0214814=zf-UBP=PD(42.4=56.0)
Main Inclusion Isoform:
ENSGALT00000014598fB13546
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGTGGTGAAACCCATG
R:
TTGAGTCAGTCTTGCATCGGG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]