GgaEX1063131 @ galGal4
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
vitrin precursor [Source:RefSeq peptide;Acc:NP_001019751]
Coordinates
chr3:31510967-31515076:-
Coord C1 exon
chr3:31515026-31515076
Coord A exon
chr3:31511120-31511158
Coord C2 exon
chr3:31510967-31511023
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCATTTTGATGTCCACTCAGGAC
3' ss Score
6.92
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCTAGCAGCGTCCACCCTGCATATTCCTCTGTGGCAGCCGCAGCATCAA
Seq A exon
GACAAGTTCAAGCTTCACAAGGAAGAGGACTGAATAAAG
Seq C2 exon
CATTCAGGGGCACTTCCACCTCTGCAAGTAACAGGAATATTCTGCGACCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF115933=Med3=FE(5.2=100)
A:
PF115933=Med3=FE(3.9=100)
C2:
PF115933=Med3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGCAGCGTCCACCCTG
R:
GCATTGGGTCGCAGAATATTCC
Band lengths:
105-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]