GgaEX1063610 @ galGal4
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74391741-74400191:-
Coord C1 exon
chr1:74400048-74400191
Coord A exon
chr1:74396231-74396271
Coord C2 exon
chr1:74391741-74391884
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGCTTCTTTCCCAGGCA
3' ss Score
9.6
5' ss Seq
TTGGTTAAG
5' ss Score
-4.82
Exon sequences
Seq C1 exon
GCAATACATCAGTTCATGTGTCTGTTCTCCAGTATGCCAGGGAAAATAATCTAGAAATTTCACTGAACAAGCCTCAGGAGACTGAAAAACTTATTGAGATGGTGCACTCAATTCAACAGAGGGAACAAGGTCCTACTAGATTGG
Seq A exon
GCAACTTTCAGTGCTTGTGGAAGATTGACTTCTCCTTTTTG
Seq C2 exon
GCAAAGCCATTGACTTTGTAGTTCAGAATGCATTGTCAGAATCCTATGGAGGGAGACCCGACGCATCGAAGGTGGTAATTGTCATTGTGTCAGGGAAATCAGAAGACACCGTGGAGACTGCTGCACTCACTGCAAGAATGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(27.0=100)
A:
PF0009223=VWA=PD(1.2=7.1)
C2:
PF0009223=VWA=FE(27.0=100)
Main Inclusion Isoform:
ENSGALT00000027924fB13704
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGAACAAGCCTCAGGAGA
R:
GTCGGGTCTCCCTCCATAGG
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]