GgaEX1064197 @ galGal4
Exon Skipping
Gene
ENSGALG00000009321 | WIPF1
Description
WAS/WASL-interacting protein family member 1 [Source:RefSeq peptide;Acc:NP_001012935]
Coordinates
chr7:16313906-16348926:+
Coord C1 exon
chr7:16313906-16313941
Coord A exon
chr7:16332694-16332807
Coord C2 exon
chr7:16348838-16348926
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTCTTCCTTGCAGGAA
3' ss Score
13.41
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCCGCCGGCAGCCGCCGCCTCGCCCGACGGAGCGCG
Seq A exon
GAATGTGCAGCCTGGGAAATGTTCCTGCGATCTAATTAGCTTCAGCAGGTGCATTCTGGAGTGAATTTGTCAGGCCTCGTGTTCTGCCCAAGCACCTCTCCAGCTGCTGAGGAG
Seq C2 exon
ATTTCTTAGCAAGATCAGCTGGAGCTCAGCCTTCCACCATGCCTGTGCCTCCCCCGCCAGCGCCCCCGCCGCCCCCAACGCTGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0121314=CAP_N=PU(28.1=94.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]