Special

GgaEX1064422 @ galGal4

Exon Skipping

Gene
ENSGALG00000006025 | XIRP1
Description
xin actin-binding repeat-containing protein 1 [Source:RefSeq peptide;Acc:NP_989679]
Coordinates
chr2:4945228-4954503:-
Coord C1 exon
chr2:4954450-4954503
Coord A exon
chr2:4948021-4952730
Coord C2 exon
chr2:4945228-4947542
Length
4710 bp
Sequences
Splice sites
3' ss Seq
TCAAAACTGTTTCCCTAAAGATG
3' ss Score
5.43
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAACTGTGAAGGACAGCTCCACTCAATCTCTCAACAGCCAGAAAGCAAGCAAG
Seq A exon
ATGGCAGAACCTCAGAAATCATCCAAAGTTGCCATCAAGAAAATGGAAGACGACTTGCCTCCCCCTCCCATCCCTGGCTCAATCCAAGTCATCGCTCCCGCGAGCCAGGATCCCAACCCACTCCCTGTGCCTCCTCCTAAGCAAGCCTTCTCCAAGTTCTACCAGCAGCGACAAGTAAATGAGCTAAAAAGGCTCTACAGACACATGCATCCTGAGCTCAGGAAGAACTTGGAAGAAGCTGTGACTGAGGACCTGGCAGAAATGCTTAATACTGAAGATCCCAATGCACAGGGATCTGTGAACCTGGATAAAGTTCTTCCCGGAGAGGTTCAGTCCATGCGCTGGATCTTTGAGAACTGGGCACTTGACTCTATTGGGGACCATCAAGTCACAAAGAAGATGATGGAAGATGAGATAATTCCCGGTGGGGATGTGAAAAGTACTTCTCTGAGGTTTGAAAACCAGTCAGTCAACGGGGACTATCTGTCAACAACAGCAAAGGTATCAGAGACAGACCTTGCCAGAGGGGATGTGCATACTGCCCGGTGGCTCTTCGAAACTCAGCCTTTGGACTCATTAAACAAACTGTACTCAGATGAAACTGAAATGCAAGAGGCAGTTCTCAAGGAGCCGGTCCAGGGAGGTGATGTGAAAGGAGCCAAAGAGCTCTTTGAAGCCCAGTCCTTGGATGCTATAGGACGCTGCTGCTCAGTGGAGGAGAAGAGCATCCTGCAGCTCAAGTCAGAAATCCAGGAGCTAAAAGGTGACGTCAAGAAGACTATCAGGCTCTTCCAAACAGAGCCCCTCTGCGCAATTAGGGACAAAACTGGAAACATCCATGAAATCAAGTCTGTTTGCCGAGAAGAAATTCAGAGCAATGCAGTCAGAACAGCTCGCTGGCTGTTTGAGACTCAACCACTGGATACCATCAACAAGGACACTTCCAAAGTACAAATAATCCGTGGGATCTCATTGGAAGAAATTGGAAGGCCAGATGTCAGCGGAGCAAGGTGGATATTTGAAACTCAGCCTCTGGATGCCATCAGAGAAATTACTGTTGAAGAACAGGATTTCAAAGCTTCAACAGATTTTGTTACAGGGGCAGATGTCACTAAACAGCGATTACTCTTTGAGACCCAGGCCCTTGATTCTTTGAAAGGAGAAGCTTCAGAGAGTGTTGCAGCCAAAGAACAAGTCATTGGAGGTGATGTGAAATCTACACTCTGGCTATTTGAAACTCAGCCGATGGAAACCCTGAAAGACAATGTTGAGGTGGGTCATTTGAAAAAAGTAGAGCTTTCAGCAGAGGAGAAGGGAGATGTGAAACAAAGAAAACATGTGTTTGAGACCTGTCCCCTTGGCAGTATCTCCAAGGCATTTGAGGAAGAAGTTTCAGCTGCCAGCACGGAAGAGGTGGTCAAAGGGGATGTGAAATCTTTCAAGACCCTATTTGAGACTCTCCCCCTAGACAGCATCAAGGAGGTTGATGCTGAGCCCATCACCAAGGAAGAGGAGAAGATTCCACCTGGCAATGTCAAAGCTAATCAAATCCTATTTGAAACTACACCCCTCTATGCCATCAAGGATAGCTTTGGCAATTTTCACGAAGTCACATCTGTAAGCAGAGAGCAAGTCATTAGTGGTGATGTCAAGAAGTACAAATGGATGTTTGAAACCAGGCCACTGGACCAATTTGATGAAAGCACCAAGAAAGTGGATATAATACGGGGGATCACAAAACAGGAGGTGGTGGCTGGTGATGTCAGAACAGCCAAGTGGCTCTTTGAAACTCAACCTATGGATGTCATTCATCACCAAGCCACACAAGGTGAGGAACACCCCTCAATGAAGCGGGAAATCTCCCAGCGGGGGGATGTGAAGACCTGTAGGTGGCTTTTTGAGACCCAGCCCATGCACACCCTGTATGAGAAGGCTGAAAAGAAGCAAGAAGAGGATGTCAGTGTGCCCCAAGCTGATGTGAAATCGTACACATGGATGTTTGAGACTCAACCCCTGGACTCCCTGAAGGGTCAAGAGGAGCAGTATTTGAGAGTCAGTAAAGCATACAGTCAGGATGAATTACAGGGAGTTGATGTCAAAACTGTCCGGCACCTATTTGAGACTGAACCTTTGGGCAGCAGTGTTGTCAGTGAAGCTGACCAAAAGAAAACCCTGAGGTACTCTAGTCGTGTGGAGATACAGTCTGGGGAAGTGTCCAGAGTGAAGGAATTCTTCGAGGCTAAGCCCTTAGATACAACAACAAAACCAACAGCGGTCATCAAGGACGATGGGACGATTGAAGCTGGATCAGTGCACAAATTCACTTGGCTCTTTGAGAATTACCCCATGGACACCCTGAAGGACAGTTCTGAAGGCATCCAGGAAATCCCTCCAGAGAAGGATATCAAGGGGGGAGATGTTGGAGGCAAAAGGTTCATATTTGAGACCTACTCTCTTGACCAAATCCATGACAAAGTAGATGAGACGGAGCTTCACAAGATCCAGAAAGACACCATGAGCAAAGCAAACGTCAAGTCCTGCACAATGCTCTTTGAAAGCCAACCCTTATACGCTATCCAAGACAAAGAGGGGGGATACCATGAGGTCACTTCAGTGCAGAAAGAAGAAATCATGAAAGGTGACGTGAAAGGTGCACGGTGGTTGTTTGAAACGAAGCCCCTGGATCAGATCAAAAAGGAAGAAGAAGTGTTTGTGATTCGGGCTGTCACCCAAGAGGACATCAAGAAAGGAGATGTCCAGGCTGCCCGGTGGAGGTTTGAAACAGAGCCTCTTGACTCTTTCCCTGGAGGAAAGATTTCTGTGCCCAGAACAGTAGATGATGTGCAGAAGGGAGATGTTCAGTCCAACAAGCAGCTCTTTGAGTCCCAGCAAGTGGGCCAAAAGAAGTATGTGAGGATGGTCAGTGTCAGTGATGTTCAGCGGGGTGATGTGAGGACATCTACCTGGCTTTTTGAAAACCAGCCTGTGGACTCCCTTTATGGGGATGCAGACAGAAGCTCATCTATCAGTACAGTGCAGAGAGAGGACAGCCAGAAAGGAGATGTCAAACGTTGCACCTGGTTGTTTGAAACCCAGCCCATGGACACTCTTAAGGACCCAGAGGTGACAGTCAGTACTGGGACCCAAGAACCAATCCCTCGTGCAGATGTGAAAAGCACAACATGGCTCTTCGAGAGCACTCCCTTGGATAAATTCAGTGCTTCTGAATGCAGCAGGGAAACAGAACTGAAAGAAAGAACTATGAGGGAGACTTTAGAGACACTTTGTACTTGCCAGGCTATTCAGCACGATGGGATCCTCATTGAAGCCAATGATACGGAAAGCGTGAAGATGGTGAAGTACCAGCTCAGTAGCCCAGGTGCTCCAGAAATCCTGAAAGAAGAGATTGTGAGGGGCCATTTACAAGGAATCATGCTGCAGCTCCTGCACAGAACCAACGTGGAACCACAGAGTGTGCTGGTGGAGGAGGACAGAGAGGGCAAGATCAAAGTAAGCTCACTGCAGCTTCTGGACCAGAGTGAAGCTATTAAAGGCAAAGAGGACTTGAGTGGAAACGTAGCTAAGGCTCTCCAGAGCCTCCTTAGTCAAGACGCTTCCATCAAAAAGGGGATGGTCATACAAGAGACAAAGTCAGAATCAGTGAAGATGACCCTCTACTCCCTCCTGTTCCATTCTGTCCAGCAAAAAGTTGTCAAGGGGGATGTGAAGTCAACAATAGGGAACCTGATGGCTTCTTCTCAGGAGCAGAGGGCTACAGTAACTGTTAAGCGTGAGGACAATGAGAAGGGGAACGTCCAGCTTTTTGCAAGTTGCATTGAGAAGGGAGATCTGGACTATCTGAAGAACCTTCAGCAGGAGTCAGAAATACAGTCCCTCATCTCTGCCCAAGCAGAGCAAGGGGCAGCTGAAAGTGCCCCACGGGCTTTGCAGAGTACTAATACACATGTCTTAGCAAACAAAGAACAAGTAGAGAAAGTAATGGCAGAGGCAAAGTCAGGGGCTCTGGAGGGAGCAAAAATGGTATTTGCATGTGAAAGCACGGGCAAAGAGGGTGCATTAGAGAGAGAGGTTGTGCATGCAGTGGGTGTGACAGGCACCACTGTGCAATGTCTTGGGAAGCCCCAGAACCTGCCCACAGGGATGGAAAAGGAAGAAATCATGTCAGGGGGCCTTAAAGTAACTACAAAGTCAATTCAAAGGGTTGCAGATGTCAGCAAGAATACAGAAAAAGAAGAGTCCATCTCTGCGTGTTTGAAGGAACCCAAAGCTACGATGCAAGGCATAGCCCAGGCCAAAGTGACAGCTGAGAGGAATGAAGTGGTTGGAGAACAGCAGAGTTTGGTGACTGAGCAAGCCAGCCAGAAGCAGTCAGAAGAGAAGGTCCTTGGGAATGATCTTCAGGCTGCAATGCAAAGCCTGAGGCTAGCAACAGCAGAAGCAAGAAACATTCAACACCACGTCCAAAGCAAGCTACAAAGGAACAGGGAGGAGGTCCACATGGCCTGCAGACAGCAGGTAGCTAGTAAGCAGGAGACAAAGACCCTTCAGTCGACCATACATCAGCAAGAGTCTGCATCTACCATGCGGGAGAATACCAGCACAGCCATCAGGACCAGCACCACTAGAGTCCAGGAGGCATCCCGGACCCACACAAGTGTGTCTCAGAAGAGTATAGCATCACATAAAAAG
Seq C2 exon
TTGCTGTGATGAAAGCAGAACATTGTCCACCCTCAACCAAAGCAACAAGAGAAGGTGCCCCTCCATTATTAACCAGCAAAGATGAAGCCCCAGGATGTTTTTCACCACTCCAGACCCCTCTCCCTCCCCCCCCTTCTCTGTCCTGCAAACCCAGTGACCAGAATTCTACAGAGAAGCCCAAGATTCCTCCAAAACCAGAAATTACTGCCCCACTGAGGAAAAAGCCTGTCCCCCCACCAAAACCTGAGCACCTCTTACACGAGGCATATTCTGCTTCTACAAATAACAGCACAAACAGATCAACCAAATCTGTCCCTCCACCCGTGCCTCCAAAACCTCCAGGCTTGAGGGAGATCAGCATGCCAAAGCCTCCCCCTGCAGAGCTGCAGTTAAGTTGCACGGAAGTATGTGAACAATCAGATCACAGGGAGAGTCAAGATAAATGCTGCACTTTGGAGTCGTCCATGGACAAATCTATCACAGTTCAGGGCCCTGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006025_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.806 A=0.301 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF080437=Xin=WD(100=1.0),PF051637=DinB=WD(100=6.9)

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSGALP00000009684





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSGALP00000038126
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
chr3:39186089-39189445 
Human
(hg19)
chr3:39227580-39230936 
Mouse
(mm10)
chr9:120016426-120019815 
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]











Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"