GgaEX1065335 @ galGal4
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27556008-27573807:-
Coord C1 exon
chr7:27573738-27573807
Coord A exon
chr7:27570060-27570139
Coord C2 exon
chr7:27556008-27556353
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACTTCGTGATCTCATTGCAGTTT
3' ss Score
6.39
5' ss Seq
CGTGTTAGT
5' ss Score
-5.22
Exon sequences
Seq C1 exon
ACGGCTGCTCTGAGCCGCCCCGCGCCGCCGCCGCGTCCCGGCCCGCCTTCTCCTCGCAGCTCCGCGGCTT
Seq A exon
TTTGGAAAACAGCGAGGCACAGCTCTTGAACAGAGTCCCTGCACTGGCCTTATCCTGCAACTGATATGCTCCGCAGACGT
Seq C2 exon
GTTATTGCACTTAAGAATGAACATTGAAGACAAGCTGGGAGGATTATTTCTTAAATGTGGTGGCATAGACCAGATGCAGTCATCCAGGGCTATGGTAGGGATGGGTGCAGTATCTGACCAGTCCGGAGTGTCGGGAGAACGGCAAGAGGCGGTGCTTCAAGATCGGACTATGGCGCACCAGGAAATTCTTGCACCAGACGAAGTGTTACAGGAAAGTGAACTTCGACAGCAAGAGATGATTTCACATGATGAACTCATGGTCCATGAGGAGACGGTAAAAAATGATGATGACATGGATACGCAAGATAGACTTCCTCAAGGGCTGCAGTATGCTGTTAATGTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.696
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCCTCGCAGCTCCG
R:
CTTGCCGTTCTCCCGACAC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]