GgaEX1065573 @ galGal4
Exon Skipping
Gene
ENSGALG00000000160 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
JH376303.1:18849-19532:+
Coord C1 exon
JH376303.1:18849-18980
Coord A exon
JH376303.1:19253-19311
Coord C2 exon
JH376303.1:19480-19532
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTCTGCCTCCTTTAGGCC
3' ss Score
11.23
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCCTACTTGGAAATGAACTACAAGGAGGCGGTGATAGCAGCCGTCAAGTATGGTGAAACTGTGCCAGTGCTGGTGAATGGGAAACAGGTGAAGATCAGCGTCGCAGAGAAGCCCAAAGCATCTCCCAGCCAG
Seq A exon
GCCAAAACGAGTGTCAAAAAGAGGACTCGGATCATCAAAAGAGCGGCCCCGAGCGCCAG
Seq C2 exon
AAAACACCCAACCGCCAGCACCGCCGCCACCAAGACAGCGAGAACGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000160_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PD(44.1=73.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGTCAAGTATGGTGAA
R:
CCATCGTTCTCGCTGTCTTGG
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]