GgaEX1065612 @ galGal4
Exon Skipping
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:485033-488641:+
Coord C1 exon
chr2:485033-485159
Coord A exon
chr2:486253-486666
Coord C2 exon
chr2:488528-488641
Length
414 bp
Sequences
Splice sites
3' ss Seq
GGTTCTTTGGCCCTGAGCAGACT
3' ss Score
2.75
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
Seq A exon
ACTATGCTGTGTCCAAGCCTGACATCCTGTCTCGAATTGAGAGGGGTGAAGAGCTCTGTGTCAAAGACTGTTGGGAGCCCCCACAGACGCTCAACCGAGATGGTCCAGAATCCCCACGGACCATCCAGGATGGGCAGGAGCTCACACAGACACACAACACAGGCAGTGAGGAACCTCTTCAGGCACACATCCAAGACAATGAGGAGCCCATACAGGACTGCAGCAAAGACAGTGAGGAGCTGTTGAAGACATGCCTCAAAGATGGTCAGGAACCCACACAAACGTGTATCACAGACAGTCAGGATACCCCACAAACAGGCATCGAAGATCGTCAGGAGCCCTTGCAGGCACCAGAAGAGATGGACCAGATGGAGGAGGCTTTGGGAAAAGATGTTCGCGTGGAAGCTGATATGG
Seq C2 exon
AATTTCCCAGAGTGGTGATGCATGTTTTGTCTGTGAGTGCTCAGAAAGAGAAGTTGAGCAGGGAAGAACATCCTGACTCAGAGGTGGAAGATGACCCAGCGGACTTTGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.820 C2=0.795
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
ENSGALT00000045404fB3532
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACATTTGATGACATTGCCGTG
R:
CCAAAGTCCGCTGGGTCATC
Band lengths:
230-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]