GgaEX1065908 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2635535-2661800:-
Coord C1 exon
chr22:2660508-2661800
Coord A exon
chr22:2644008-2644100
Coord C2 exon
chr22:2635535-2635636
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTGCGTGTCTTTCAGAGA
3' ss Score
11.12
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CTCTTTTCATACTGCAGGAGAGGCAGTGAGGGAGCGAGCACAGAACAGCCTGGTGCCCTGTCCCACCAGGAGGGTTCTGCATAATGTGCCAGTGCAGTCAGGGGCTGCTGCAGTGGTGCACACAACCTCTGGAACAGCTGGATTTGGGATTATTAATGCTTTATAAAGGTGTTCTGGACTCCATCTAGCAATTAGCTGGAGATACTGTCTGTCCTTTGGGGCTTGTTGTCTGCTTTCTATCTTCCTCTCGTTACTGGTTTCACATCCATCTGGGTTGATAGCATTTGAGCTGGAAACCTTCGTGGCCAGGAACAGGAGTGTGCTGTGCGGAAAGTGCCGCTGTGAGATCTGGAGCAGCTGCAGTCTGACCAGCCATGGCTCAAGCAGCAAAGCAGCTGAAGAAAATCAAAGACATTGAGGCTCAGGCTCTACAGGAGCAGAAGGAGAAGGAAGAATCCAATCGCAAGCGCAGGAACCGCTCTCGGGACCGGAAGAAAAAG
Seq A exon
AGAGGGCATGCACCAACCACTGTGGACCCCTTGCCTTCTTGTTGCAAGCAAGGATCTCCTGAAGGGATGCTGGAGCAGGAGTCTGCTGTGCAG
Seq C2 exon
GCTGATGCTGCGACCAGCTTCCTGAGAGCTGCAAGATCTGGGAATCTGGACAGAGCCTTGGATCATCTCAGGAATGGGGTAGATATTAACACCTGTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.968 C2=0.066
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF127962=Ank_2=PU(29.0=79.4)
Main Inclusion Isoform:
ENSGALT00000005683fB14109
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTCTGACCAGCCATG
R:
CTTGCAGCTCTCAGGAAGCTG
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]