GgaEX1065940 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8174622-8374290:+
Coord C1 exon
chr6:8174622-8174672
Coord A exon
chr6:8211641-8211679
Coord C2 exon
chr6:8374189-8374290
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTTTTTTTTTTAAGGTG
3' ss Score
11.36
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGGCCTCCTCCTCCTCCTCCTGCCCCGCGGGACGGGGCGGCCGGGACCAG
Seq A exon
GTGTGCCCTAGATTCTACCCTCCAGGAAGCCCCAGAAAG
Seq C2 exon
TCGGACACAAATGCAAGTTACTTGAGAGCTGCTCGAGCTGGCAACTTGGAAAAGGCTCTTGACTACTTAAAAAGTGGAGTGGACATCAACATTTCTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'0-4,'0-1,6-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.923 C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.3=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCTCCTCCTCCTCCTC
R:
CAAGAGCCTTTTCCAAGTTGCC
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]