GgaEX1066040 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55664949-55666174:-
Coord C1 exon
chrZ:55666022-55666174
Coord A exon
chrZ:55665352-55665417
Coord C2 exon
chrZ:55664949-55665074
Length
66 bp
Sequences
Splice sites
3' ss Seq
AAAAATATCTACCTCCACAGTTG
3' ss Score
6.53
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATACCCGCCAGAGCTTCTGTTTCACTAATTTTGAGAATGGGAAGTGCTCTGTCCCAAAGGCTTTCAATACCACAAAGGCAAAGTGTTGCTGCAGTAAAATGCCAGGAGAAGGATGGGGTGACCCTTGTGAGCTTTGCCCAAAGGAAGAAGAAG
Seq A exon
TTGCTTTTCAGGACCTCTGCCCATATGGTCATGGGACTATTCCTGGAATTGATGATACACGTGAAG
Seq C2 exon
ATGTTAACGAATGCCTTGAAAGCCCAGGGATTTGCTCAAATGGTCACTGCATCAACACTGATGGGTCCTTCCGCTGCGAGTGCCCAATGGGATACAACTTAGATTTCACTGGAGTACATTGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'61-64,'61-63,62-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=73.1)
A:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTGTCCCAAAGGCTTT
R:
CGGAAGGACCCATCAGTGTTG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]