GgaEX6003285 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79353518-79354576:+
Coord C1 exon
chr1:79353518-79353635
Coord A exon
chr1:79353948-79354176
Coord C2 exon
chr1:79354450-79354576
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGTCCCTCACCAGCTC
3' ss Score
9.56
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
AATTATCAGCCCTACAGTCAAATAGAATCCATGAAACATCCAGCACTCCTGAAGAGGTGACAGAGACAATCCGAAAGTATTTCCCAGAAACATGGATTTGGAGTTTAGTATCTATAAG
Seq A exon
CTCTGAGGGAAACGCTGAACTAGATGTGACCATCCCTGACACCATCACTGAATGGAAAGCCAGTGCATTCTGCATGTCCCCAGACACAGGCTTTGGCCTGTCACCAACAGTGTCCCTCAGAGCCTTCCAGCCTTTCTTTGTAGAGCTCACCCTGCCTTATTCTGTAGTGCGTGGTGAGGCCTTCACGCTGAAAGCTACTGTTTTCAACTACCTGACAGCCTGCATCAGA
Seq C2 exon
GTCAGCGTGATTCTGGCTCAGTCTACTCAATTTCTGGCTACTCCAGTGGAAAAGGAGGAAGACTCTCATTGTCTCTGTGAGAACGGGAGGAAAACAGTGGCTTGGCTGGTGACTCCCAAATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'28-33,'28-31,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=22.5)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATCAGCCCTACAGTCAAATAGA
R:
CTAGAGATTTGGGAGTCACCAGC
Band lengths:
244-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]