Special

GgaEX6003299 @ galGal4

Exon Skipping

Gene
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75786439-75787859:-
Coord C1 exon
chr1:75787741-75787859
Coord A exon
chr1:75787239-75787290
Coord C2 exon
chr1:75786439-75786522
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCATCACCATTCCAGCCT
3' ss Score
5.49
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGATGTATTATTCAGCATTACAGCTGAGACCAACGATGATGAAGCTTGTGAAGAAGAAGCACTTAGGAACATCCGTATTGACTACAGGGACACCCAGATCAGGGCATTGTTGGTTGAG
Seq A exon
CCTGAAGGCATAAGAAGGGAAGAGACCCAGAACTTCTTGATCTGCATGAAAG
Seq C2 exon
ATGATGTCATTTCTCAAGATGTTGCTATAGATCTACCTACAAATGTGGTAGAAGGATCACCCAGACCTTCCTTTTCTGTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'28-30,'28-27,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCACTTAGGAACATCCGT
R:
AGGAAGGTCTGGGTGATCCTT
Band lengths:
136-188
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]