GgaEX6003303 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79424253-79427128:-
Coord C1 exon
chr1:79426972-79427128
Coord A exon
chr1:79426394-79426468
Coord C2 exon
chr1:79424253-79424418
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCATATCCTCTTCAGGGA
3' ss Score
9.23
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GCTCACTGCCTTTGTGTACAAATCATTTGCAGAAGCTAGTCGCTTCATATATATTGATGACAATGTCCAGGCTCAAACCCTGATATGGCTGGCAAGAAAACAGAAGACAGATGGCTGCTTCCAAAGTACTGGGATACTTGTCAACAATGCCATGAAG
Seq A exon
GGAGGAGTAGAAAATGAGCTGTCACTTTCTGCCTATATCACCATTGCCTTGCTAGAAGCTGGGCACTCCGTGTCG
Seq C2 exon
CACACAGTAATCCGAAATGCCTTTTATTGCCTGGAGACTGCATCTGAAAAAAATATCACTGACATTTACACGCAGGCACTTGTGGCCTATGCCTTCTGTTTAGCTGGCAAGGCAGAAATATGTGAATCATTCCTTAGAGAACTACAGAAATCAGCAAAGGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.0=100)
A:
PF076789=A2M_comp=FE(9.7=100)
C2:
PF076789=A2M_comp=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGTCCAGGCTCAAACCC
R:
TGCCTGCGTGTAAATGTCAGT
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]