GgaEX6003309 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79489014-79492517:-
Coord C1 exon
chr1:79492497-79492517
Coord A exon
chr1:79490332-79490500
Coord C2 exon
chr1:79489014-79489098
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCCCACTTCCCAGGAC
3' ss Score
9.74
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TATCCCCGAATCATCATTAAG
Seq A exon
GACCCAGAACAAAATCAGATCTTCCAGTGGTTGGATGTATCATCTATGAATGGCATCATCCAGCTCTCATTCCCATTAATTGAGGAGCCAATTCTGGGGTCCTATCACATCGTTGTGGAGAAGAAGTCAGGGGATAAGGAGCATGAATACTTCACAGTGGAGGAGTATG
Seq C2 exon
TTCTGCCAAAGTTTGAAGTGACAACCAGCATGCCCAGGAGGATCTCTTTCTTTGATGAAGAAATCAGGGTGAATGTTTGTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]