GgaEX6006285 @ galGal3
Exon Skipping
Gene
ENSGALG00000017094 | F1P2M4_CHICK
Description
NA
Coordinates
chr1:180351960-180355507:+
Coord C1 exon
chr1:180351960-180352710
Coord A exon
chr1:180355062-180355207
Coord C2 exon
chr1:180355439-180355507
Length
146 bp
Sequences
Splice sites
3' ss Seq
CGCGGCTTTGTCCTCCGCAGTCA
3' ss Score
9.65
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CCTGGACAAGGACGGGCCCATGTACCCCGGCCCCGTTCGCCACTCGGGGGGGCTCAACCTGGCGGCGCAGAACTTCGTGGGCGCCGCGCAATACGCGGACTACGGCGGCTACCATGTGAACCTCGACGGCGCGCAGTCCCCCGGGCCGGCCTGGCCCGCGCCCTACGCCGCTCCTCTCCGCGACGACTGGGGGGCCTACGGGCAGGGAGCCCCTCCGCCCGCCGCCGCCGCCGCCGTGCACGGCCTCAACGGCGGCTCCCCGGCCGCAGCGCTGTCCTACAGCCCCGCCGACTTCCACCACCACCACCACCACCACTCGCACGCCCACCACCACGCCGGCCCCGCGCCGCACTGCTCCGCCGGGGGGATGCAGCCTCTCGGCGCCGTTCTCTGTAGCGCCGCCGCCTCCGCCGCCCCCGAGTCGCTGTCCCCCGGCGGGCAGCGCCGCGGCCTCTGCGAGTGGGTGAGGAAACCGGCGCAGGCCCCGCTCGGTAGCCAAG
Seq A exon
TCAAAACCAGGACGAAGGACAAATACCGCGTGGTGTACACGGACCACCAGCGGTTGGAGCTGGAGAAGGAGTTCCACTACAGCCGCTATATCACCATCCGGAGGAAAGCTGAGCTGGCCTCCAGCCTGGGGCTGTCGGAGAGGCAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGTCGGGCGAAGGAGAGGAAGATCAACAAGAAGAAGCTGCAGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017094-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.265 C2=0.652
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=WD(100=92.5)
A:
PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCACCACCACCACCA
R:
TGATCTTCCTCTCCTTCGCCC
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]