GgaEX6008100 @ galGal4
Exon Skipping
Gene
ENSGALG00000006725 | ACAN
Description
aggrecan core protein precursor [Source:RefSeq peptide;Acc:NP_990286]
Coordinates
chr10:12562338-12563786:-
Coord C1 exon
chr10:12563612-12563786
Coord A exon
chr10:12563222-12563349
Coord C2 exon
chr10:12562338-12562634
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTATGCACCTTGTCCCACAGGTA
3' ss Score
10.13
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCGTCGTGTTCCACTACAGAGCAATCTCCACAAGGTACACTTTGAACTTCGAGAGGGCAAAGCAGGCCTGTATCCAGAACAGTGCTGTCATTGCCACCCCTGAGCAGCTGCAGGCTGCCTACGAGGATGGGTACGAGCAGTGCGATGCCGGCTGGCTGGCTGATCAGACTGTCAG
Seq A exon
GTACCCCATCCATCTGCCCCGGGAGCGCTGCTACGGTGACAAGGATGAGTTTCCAGGAGTGAGAACCTACGGTGTCCGTGAGACAGATGAAACCTATGATGTTTACTGCTATGCAGAGCAAATGCAAG
Seq C2 exon
GCAAAGTCTTCTACGCCACCTCCCCCGAGAAGTTCACCTTCCAGGAAGCTTTTGACAAATGCCACAGCTTGGGAGCCCGCCTGGCCACCACGGGCGAGCTGTACTTGGCCTGGAAGGATGGCATGGACATGTGCAGTGCGGGCTGGCTGGCTGACCGCAGCGTTCGCTACCCCATTTCCAGAGCACGGCCCAATTGTGGAGGGAACCTGGTGGGCGTGCGGACCGTTTACCTGAACCCTGCCAACCAGACAGGGTACCCTCACCCCAGCTCACGCTACGATGCCATCTGTTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006725-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PU(60.4=98.3)
A:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=WD(100=98.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAGGATGGGTACGAGCAG
R:
GTGCTCTGGAAATGGGGTAGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]