GgaEX6008688 @ galGal3
Exon Skipping
Gene
ENSGALG00000001679 | F1NV44_CHICK
Description
NA
Coordinates
chr11:969418-969896:-
Coord C1 exon
chr11:969836-969896
Coord A exon
chr11:969584-969687
Coord C2 exon
chr11:969418-969497
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGTGCCCCTCCTTAGGCT
3' ss Score
9.22
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTTCTGAGGATGGCGTTGCTGTGGGCAGTCACCTGCCTGGCCCTGGCCAGCACCGTTTCAG
Seq A exon
GCTGCGGGGTGCCCCTGATCAGCCCCTCGGTGCAGTACAGCGAGAGGATCATCAATGGGCAGAACGCGGTGTCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq C2 exon
ACCCGCTCGGGATCCCACTTCTGTGGAGGTTCTCTGATCAACGAGAACTGGGTGGTCACAGCCGCCCACTGCGAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001679-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.0=51.4)
C2:
PF0008921=Trypsin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGAGGATGGCGTTGCTG
R:
CTGTGACCACCCAGTTCTCGT
Band lengths:
122-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]