GgaEX6009917 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2928518-2929497:+
Coord C1 exon
chr12:2928518-2928688
Coord A exon
chr12:2928870-2929000
Coord C2 exon
chr12:2929353-2929497
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTGTCTGCCTTCCAGCTG
3' ss Score
9.3
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGTACCTGCAGTACATCAGGAGCCTGCCGCTCAATGACAGCCCGGAGCTCTTTGGTTTGCATGACAATGCCAACATCACCTTTGCTCAGAAGGAGACCTTCACTCTGCTAGGGGCCATTCTGCAGCTGCAACCCAAGACGTTCACACTGGGTGGCTGCAGCAGGGAAGAG
Seq A exon
CTGGTGGAGGGGACTGCAAATGAGATCCTGGCAAAGCTGCCTGCCCCCATGGACCTGCAGGAGGTGATCTGCAAATACCCACTGCTCTACGAAGAGTCTATGAACACAGTGCTGGTGCAGGAGGTGATCAG
Seq C2 exon
GTACAACAGTCTCCTGGAGGTGATTGCTCAGACACTGAAGGATCTGCTGAAAGCTCTCAAGGGCCTGGTTGTGATGTCCTCTCAGCTGGAGCTGATGGCCAACAGCTTGTACAACAACTCCGTCCCCACTGTGTGGAACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'80-83,'80-82,81-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.9=100)
A:
PF0302810=Dynein_heavy=FE(6.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGTACATCAGGAGCCT
R:
CATCACAACCAGGCCCTTGAG
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]