GgaEX6012668 @ galGal3
Exon Skipping
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7645437-7646481:-
Coord C1 exon
chr14:7646363-7646481
Coord A exon
chr14:7646053-7646205
Coord C2 exon
chr14:7645437-7645610
Length
153 bp
Sequences
Splice sites
3' ss Seq
TACAATTTTCTTTCTTTCAGGCT
3' ss Score
10.84
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CTGCTCAGAAGGTGTGTCACCTGATGGGGATTAATGTGACTGATTTCACAAGATCTATTCTAACCCCAAGGATCAAAGTAGGACGAGATGTTGTTCAGAAAGCTCAGACCAAAGAGCAG
Seq A exon
GCTGACTTTGCCATAGAGGCTTTGGCCAAAGCAAAATTTGAACGTCTCTTCCGTTGGATTCTAACTCGTGTAAACAAAGCTCTTGATAAAACCAAACGACAAGGCGCTTCTTTCTTGGGGATCCTTGATATTGCTGGATTTGAGATTTTTGAG
Seq C2 exon
ATCAATTCCTTTGAGCAGCTGTGCATCAATTACACTAATGAGAAACTTCAACAGCTTTTCAACCACACAATGTTTATATTGGAGCAAGAGGAATATCAGCGTGAGGGCATTGAATGGAATTTCATTGACTTTGGCCTTGACCTGCAGCCTTGCATTGAGCTAATTGAAAGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(7.3=100)
C2:
PF0006316=Myosin_head=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATGGGGATTAATGTGACTG
R:
GCAGGTCAAGGCCAAAGTCAA
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]