GgaEX6014580 @ galGal4
Exon Skipping
Gene
ENSGALG00000000166 | DMB2
Description
Major histocompatibility complex class II beta chain BMA2, (similar to HLA class II, D beta chain) precursor [Source:RefSeq peptide;Acc:NP_001128638]
Coordinates
chr16:77016-79327:-
Coord C1 exon
chr16:79282-79327
Coord A exon
chr16:78224-78505
Coord C2 exon
chr16:77016-77300
Length
282 bp
Sequences
Splice sites
3' ss Seq
CCTCTATCCCCCCAATGCAGGTG
3' ss Score
8.96
5' ss Seq
GGAGTGAGC
5' ss Score
2.46
Exon sequences
Seq C1 exon
GCGATGTTGGTGCTATTGGGGCTGCTGCTGGGAGTGCGGGGGGCAG
Seq A exon
GTGCCTTCATGGTGCATGTGGCCAACTCCTGCCCACTGGCAGCCAATGGCTCTCTGCGCGGCTTCGACCTCACCGTGGCCTTCAACAAGAACCCTCTGGTGTGCTACGACCCCGATGGCCACCTCTTCAACGCCTGCGACTGGGGGCTGCTGCACGGCGTGGCTGGACAGATTGCCATTGCCCTCAACAATGACAGCACCTGGGTGCAGCGTGCAGAGGCACGGAGACGGGCGTGCAGCAAACTGGCTGCACAGTTCTGGGCACAGACGGCGCTGCGCAGGA
Seq C2 exon
CTCAGCCCCAGGTCCGCATCGTCCCCGCACAGACAGGGAACCCCAGCGTGCCCATCCGCCTCACCTGCCACGTGTGGGGCTTCTACCCCCCCGAGGTGACCATCATCTGGCTACACAATGGGGACATCGTGGGGCCTGGAGACCACTCGCCCATGTTCGCCATCCCCAATGGGAACTGGACCTACCAGACACAGGTGGCCCTCTCGGTGGCCCCAGAGGTGGGGGACACCTACACGTGCTCGGTGCAGCATGCTAGCTTGGAGGAGCCCCTCCTGGAGGACTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000166-'6-2,'6-1,11-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0765410=C1-set=WD(100=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGGTGCTATTGGGGCTG
R:
CCTCCAAGCTAGCATGCTGC
Band lengths:
307-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]