GgaEX6015723 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:394393-396430:-
Coord C1 exon
chr18:396292-396430
Coord A exon
chr18:394722-394840
Coord C2 exon
chr18:394393-394542
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTTGTCTTTAGTTG
3' ss Score
9.15
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGTGCCATTGACATCCTGGGCTTCACTCCTGATGAAAAAACAGCCATTTACAAGCTGACGGGGGCTGTCATGCACTATGGCAACCTGAAGTTCAAGCAGAAGCAGCGTGAAGAGCAGGCAGAGCCCGATGGCACAGAAG
Seq A exon
TTGCTGACAAGGCTGCTTACCTGATGGGTCTCAACTCAGCAGACCTGCTCAAGGCCCTGTGCTACCCCCGAGTCAAAGTTGGGAATGAATTTGTGACCAAGGGTCAGACTGTGCAGCAG
Seq C2 exon
GTGTACAACTCAGTTGGTGCCCTGGCAAAGGCTGTCTTTGAGAAGATGTTCTTGTGGATGGTTGTTCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATTGGTGTCCTGGACATCGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102-'13-12,'13-11,15-12=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGGCTTCACTCCTGAT
R:
CCAATGAAGTACTGCCTGGGC
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]