GgaEX6023689 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1021801-1023132:+
Coord C1 exon
chr21:1021801-1021929
Coord A exon
chr21:1022045-1022173
Coord C2 exon
chr21:1023004-1023132
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTTGTTCCCCACAGCCT
3' ss Score
10.13
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTGCCCGGCAGGATGGTTCGGGTTGGGCTGCCGGCGCCGCTGCCAGTGTGAGCACGGGGCTATGTGTGACCACGTCAGTGGGGCATGCACATGTGCTGAGGGCTGGAGGGGGACCTTCTGTGAGCACC
Seq A exon
CCTGCCCAGATGGATTTTATGGCATTGAGTGTCAGCATGCCTGCAACTGCCAGAATGGAGCCCACTGTGACCACATCACTGGGCAGTGCCACTGCCACCCAGGCTGGACTGGGCCCCGCTGCGCCCATG
Seq C2 exon
CGTGCCCGCAGGGCAGGTTTGGTGAGGGCTGCAGCCAGGTGTGCAGCTGCTCCAACAATGCCACGTGTGACCACATCACTGGCCGCTGTCTGTGCACTGCTGGCTGGATGGGACCCACATGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'26-31,'26-30,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.0=36.4)
A:
PF126612=hEGF=WD(100=29.5)
C2:
PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTTCGGGTTGGGCTG
R:
CTTGCTGGCATGTGGGTCC
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]