GgaEX6025633 @ galGal3
Exon Skipping
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3576541-3579902:-
Coord C1 exon
chr24:3579332-3579902
Coord A exon
chr24:3578162-3578754
Coord C2 exon
chr24:3576541-3577114
Length
593 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTGGCACCTGCAGAGG
3' ss Score
7.88
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTCCACAGCCCTGGAGACTGATTTTGGCCTGCTAGTGACTTACGATGGCCAACACTACGCCTCCGTCTCCGTTCCTGGCACGTACATCAATGGCACGTGTGGTCTGTGCGGGAATTACAACAAAGACCCCGAGGACGATGCGCTGCGCTCGGATGGCAGGTTGGCTTCCTCCGTGCCAGAACTGGGCGAGAGCTGGCGAGTGCCGCACCCCGAGAGGAAGTGCTCCCCTGGCTGTGTGGAGAACTGCAGCGTCTGCGATGCCTCCACCGAATCCCTCTATTTCTCCCCCGAATATTGTGGCTTCCTCAACAAGAGTGGCGGGCCGCTGTGGGAGTGTGGCTCCGTCGTGGACCCCACTGCCTTCGTACATAGCTGTGTCTATGACCTGTGCAGCGCTCGGGAGAACGGCACCGGGCTGTGCCAAGCCATCCAGGCGTACGCTGCGGTGTGCCAAGGCCTGGGCATCCCGGTGGGAGAATGGCGTGCCCAGACGGGATGCG
Seq A exon
AGGCGGCCGTGCAGTGCCCGGAGCACAGCCACTACTCAGTGTGCGCCAGCGGCTGCCCTGCCACATGCTCAGACCTGACAGCCCCACTGCGCTGCACTGCACCCTGCGCCGAGGGCTGTGAGTGTGACGATGGCCATGTGCTGAGCGCCGACCGCTGCATCCCTGTGCAGAAGTGCGGCTGTGATGTGGACGGACGGTACTACGCCGTCGGAGAGGTGTTCTGGGCAACAGCGGACTGCACAGCAGAGTGCCAGTGCGAGGACGGTGGGGAGGCCAAGTGCTTCAACACCAGCTGCCCCGAAGGAGAGGTCTGCACCATTGAGGATGGCTACCGGGGCTGCTACCCAAAGCGGGAGGGCCTGTGCTCGGTGGGACAGAACCAGGTGCTGCGGACGTTTGATGGTGTCACCTTCCCCTACCCGCTGGAGCACTCTTACACACTGCTCAAAACATGCATGGAGAAGCCTGACTTCATTGAGGTGGACATCAGTCAGAAGAAGCCGGGATACGCTCCCAATGGGCTGCGCGTCATGCGGATCCAGGTGGTTGGCCAAGAGGTGAAGGTTGGAGGAGCCAGCCTGTCAGAGGTCAAG
Seq C2 exon
GTGAATGGCTATGATGTGGACCTGCCATATTTCCACCCTTCTGGCCACCTGGAGATCTACCGCACTGACAACGGCACTGTGACGGAGTCAGAGGGACTCCTGAGCATTGGCTACTATGATTCAGGCCTCTTAGAGATCCGCCTCTCCACCGCCTACTTCAACTGCACGGGGGGCCTGTGTGGCTTCTTCAATGGCAATGACAGTGACGAGTTCTGCACGCCCAAGGGCAAGTGCACAGACAACCTGGAGCTCTTCCTGGAGAGCTGGACAACGTTCGATGAGATCTGCAACGGGGAGTGTGGGGACCTCCTCAAGGCATGCAACAATGACTCGGAGCTGCTCAAGACTTACCGGAGCCGCTCCAACTGCGGCATCATCAATGACCCCACCAACAGCTCCTTCCTGGAGTGCCACAACGTGGTCAACGTCTCGGCCTACTACAGAACATGCCTCTTCCGCCTGTGCCAGAGTGGAGGCAACCAGTCAGAGCTGTGCGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-'7-9,'7-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
C2:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCACCGAATCCCTCTAT
R:
ATGCTCAGGAGTCCCTCTGAC
Band lengths:
348-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]