GgaEX6030399 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWX6]
Coordinates
chr3:44693036-44695994:+
Coord C1 exon
chr3:44693036-44693202
Coord A exon
chr3:44694119-44694267
Coord C2 exon
chr3:44695901-44695994
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTCTTTCTTCACAGATT
3' ss Score
12.58
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GGACCTGAGGCAGAATTATTGCAGAAACCCAGATGCTGATAGCCGCCCATGGTGCTATACCACTGACCCAAGTGTGAGATGGGAGTACTGCAACCTCAAGAGATGTAGTGACAATATACAGACAATTCTACCAAAACCTCCTCAGACAACTCTGGAACCAAATCCCG
Seq A exon
ATTGCATTCATTCAAATGGTATAGATTATCGTGGTACAGTAGCAAGAACTGCAAGAGGCAGAATTTGTCAAGAGTGGAGTTCTCAGACACCACATAAACACGACTACTTCACTCCAAGGACTCATCCAAAATCAGGCCTGGAAAAAAAT
Seq C2 exon
TATTGCAGGAACCCTGATGGAGATGTGAATGGACCTTGGTGCTACACAACCGACCCAAGAAAAGCCTGGGAGTACTGTGACATTCCCAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293-'11-17,'11-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(44.9=61.4)
A:
PF0005113=Kringle=PU(60.0=96.0)
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGAAACCCAGATGCTGA
R:
AGCACTTGGGAATGTCACAGT
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]